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Physico-chemical process
REX is an ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. REX includes both microscopic processes (involving molecular... -
Pathway ontology
The goal of the Pathway Ontology is to capture the various kinds of biological networks, the relationships between them and the alterations or malfunctioning of such networks... -
PRotein Ontology (PRO)
PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. Each PRO term represents a... -
Plant Growth and Development Stage
A controlled vocabulary of growth and developmental stages in various plants. Note that this has been subsumed into the PO. -
Phenotypic quality
Phenotypic qualities (properties). This ontology can be used in conjunction with other ontologies such as GO or anatomical ontologies to refer to phenotypes. Examples of... -
Ontology of Glucose Metabolism Disorder
Including the disease names. phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. (OBO and OWL format are available in sourceforge.) -
Neural-Immune Gene Ontology
The Neural-Immune Gene Ontology (NIGO) is a subset of GO directed for neurological and immunological systems. NIGO was created by clipping those GO terms that are not associated... -
NCBI organismal classification
A taxonomic classification of living organisms and associated artifacts for their controlled description within the context of databases. -
Mass spectrometry
A structured controlled vocabulary for the annotation of mass spectrometry experiments. Developed by the HUPO Proteomics Standards Initiative. -
Mouse pathology
A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes -
Protein modification
PSI-MOD is an ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph... -
Measurement Method Ontology
The Measurement Method Ontology is designed to represent the variety of methods used to make qualitative and quantitative clincial and phenotype measurements both in the clinic... -
Mosquito insecticide resistance
Application ontology for entities related to insecticide resistance in mosquitos -
Protein-protein interaction
A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Developed by the HUPO Proteomics Standards Initiative. -
Medaka fish anatomy and development
A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes. -
MeGO
bacteriophage and plasmid reproduction and maintenance processes -
MIxS Controlled Vocabularies
Controlled vocabularies for the MIxS family of metadata checklists. See http://gensc.org/gc_wiki/index.php/MIxS for details on the MIxS checklists. -
Cell line ontology
Cell lines are key experimental models to understand protein interactions and signaling pathways. With a large pool of such data coming from different cell lines of different... -
Minimal anatomical terminology
Minimal set of terms for anatomy -
Multiple alignment
An ontology for data retrieval and exchange in the fields of multiple DNA/RNA alignment, protein sequence and protein structure alignment. -
Loggerhead nesting
A demonstration of ontology construction as a general technique for coding ethograms and other descriptions of behavior into machine understandable forms. An ontology for... -
IxnO
The Interaction ontology (IxnO) was developed to enable curation of chemical-gene and chemical-protein interactions for the Comparative Toxicogenomics Database (CTD). CTD is a... -
Molecule role (INOH Protein name/family name ontology)
A structured controlled vocabulary of concrete protein names and generic (abstract) protein names. This ontology is a INOH pathway annotation ontology, one of a set of... -
Event (INOH pathway ontology)
A structured controlled vocabulary of pathway centric biological processes. This ontology is a INOH pathway annotation ontology, one of a set of ontologies intended to be used... -
Malaria Ontology
An application ontology for malaria extending the infectious disease ontology (IDO). Version 1.22 reshapes the "parasite organism" section.
