bioportal
243 datasets · page 2 of 2 · search within
COSTART
FILE · updated 2013-10-10Coding Symbols for Thesaurus of Adverse Reaction Terms (COSTART). 5th ed. Rockville (MD). COSTART is used for coding, filing, and retrieving post-marketing adverse drug and…
CRISP Thesaurus, 2006
FILE · updated 2013-10-10Computer Retrieval of Information on Scientific Projects (CRISP)
Current Procedural Terminology
FILE · updated 2013-10-10Current Procedural Terminology
Wheat trait
FILE · updated 2013-10-10This ontology defines traits of the International Wheat Information System (IWIS) database and wheat descriptor.
Cognitive Paradigm Ontology
FILE · updated 2013-10-10This ontology is used to describe the experimental conditions within cognitive/behavioral experiments, primarily in humans.
Cognitive Atlas
FILE · updated 2013-10-10The Cognitive Atlas is a collaborative knowledge building project that aims to develop an ontology that characterizes the state of current thought in cognitive science. It defines…
Computational Neuroscience Ontology
FILE · updated 2013-10-10CNO is a controlled vocabulary of terms used in Computational Neurosciences to describe models of the nervous system. This first release of CNO is an alpha version and should be…
Clinical Measurement Ontology
FILE · updated 2013-10-10The Clinical Measurement Ontology is designed to be used to standardize morphological and physiological measurement records generated from clinical and model organism research and…
Cell Line Ontology
FILE · updated 2013-10-10The Cell Line Ontology (CLO) is a community-based ontology in domain of biological cell lines with a focus on permanent cell lines from culture collections. Upper ontology…
Cell type
FILE · updated 2013-10-10The Cell Ontology is designed as a structured controlled vocabulary for cell types. This ontology was constructed for use by the model organism and other bioinformatics databases,…
Chemical Information Ontology
FILE · updated 2013-10-10Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.
Systems Chemical Biology/Chemogenomics
FILE · updated 2013-10-10Ontology for Systems Chemical Biology and Chemogenomics
Chemical entities of biological interest
FILE · updated 2013-10-10A structured classification of chemical compounds of biological relevance.
Comparative Data Analysis Ontology
FILE · updated 2013-10-10A formalization of concepts and relations relevant to evolutionary comparative analysis, such as phylogenetic trees, OTUs (operational taxonomic units) and compared characters…
Cell Cycle Ontology
FILE · updated 2013-10-10An application ontology integrating knowledge about the eukaryotic cell cycle.
CareLex
FILE · updated 2013-10-10Categories and terms used to classify content (documents, images, etc) in electronic content repositories for life science / BioPharma. Initial version contains content model for…
CAO
FILE · updated 2013-10-10CAOontology is designed for supporting the COG enrichment study by using Fisher's exact test
Cancer Chemoprevention Ontology
FILE · updated 2013-10-10The Cancer Chemoprevention Ontology constitutes a vocabulary that is able to describe and semantically interconnect the different paradigms of the cancer chemoprevention domain.
BRENDA tissue / enzyme source
FILE · updated 2013-10-10A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.
BioTop
FILE · updated 2013-10-10A top-domain ontology that provides definitions for the foundational entities of biomedicine as a basic vocabulary to unambiguously describe facts in this domain.
Spatial Ontology
FILE · updated 2013-10-10A small ontology for anatomical spatial references, such as dorsal, ventral, axis, and so forth.
Biomedical Resource Ontology
FILE · updated 2013-10-10A controlled terminology of resources, which is used to improve the sensitivity and specificity of web searches.
BioPAX
FILE · updated 2013-10-10The BioPAX ontology (www.biopax.org) is a standard language for formally representing biological pathways. BioPAX Level 3 supports the representation of metabolic pathways, signal…
Gene Regulation Ontology
FILE · updated 2013-10-10The BOOTStrep Ontology is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical…
BIRNLex
FILE · updated 2013-10-10The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and…
Bilateria anatomy
FILE · updated 2013-10-10Anatomy of Bilateria.
Bleeding History Phenotype
FILE · updated 2013-10-10An application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders.
Basic Formal Ontology
FILE · updated 2013-10-10BFO grows out of a philosophical orientation which overlaps with that of DOLCE and SUMO. Unlike these, however, it is narrowly focused on the task of providing a genuine upper…
Bone Dysplasia Ontology
FILE · updated 2013-10-10The Bone Dysplasia ontology provides a comprehensive and formal representation of the different domain concepts involved in documenting the full complexity of the skeletal…
Breast Cancer Grading Ontology
FILE · updated 2013-10-10assigns a grade to a tumor starting from the 3 criteria of the NGS
Basic Vertebrate Anatomy
FILE · updated 2013-10-10A basic vertebrate anatomy derived mainly from FMA.
BioAssay Ontology
FILE · updated 2013-10-10The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and…
Amphibian taxonomy
FILE · updated 2013-10-10A taxonomy of Amphibia
African Traditional Medicine
FILE · updated 2013-10-10African Traditional Medicine Ontology (ATMO) describes the actors' function (healer, fetishist or soothsayer); the different types of proposed process treatment, the symptom's…
Ascomycete phenotype ontology
FILE · updated 2013-10-10A structured controlled vocabulary for the phenotypes of Ascomycete fungi
Amino Acid
FILE · updated 2013-10-10An ontology of amino acids and their properties. Inferred version.
AI/RHEUM
FILE · updated 2013-10-10AI/RHEUM is used for the diagnosis of rheumatologic diseases. AI/RHEUM contains findings, such as clinical signs, symptoms, laboratory test results, radiologic observations,…
Adverse Event Reporting ontology
FILE · updated 2013-10-10The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events.
Anatomical Entity Ontology
FILE · updated 2013-10-10AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology, to about 200 classes using the is_a relationship; it thus provides a detailed…
Animal natural history and life history
FILE · updated 2013-10-10An ontology for animal life history and natural history characteristics suitable for populations and higher taxonomic entities.
Cancer Research and Management ACGT Master Ontology
FILE · updated 2013-10-10The intention of the ACGT Master Ontology (MO) is to represent the domain of cancer research and management in a computationally tractable manner.
ABA Adult Mouse Brain
FILE · updated 2013-10-10Allen Brain Atlas P56 Mouse Ontology
Amphibian gross anatomy
FILE · updated 2013-10-10A structured controlled vocabulary of the anatomy of Amphibians.