bioportal
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Zebrafish anatomy and development
FILE · updated 2013-10-10A structured controlled vocabulary of the anatomy and development of the Zebrafish (Danio rerio).
Yeast phenotypes
FILE · updated 2013-10-10A structured controlled vocabulary for the phenotypes of budding yeast.
Experimental Conditions Ontology
FILE · updated 2013-10-10The Experimental Conditions Ontology is designed to represent the conditions under which physiological and morphological measurements are made both in the clinic and in studies…
Xenopus anatomy and development
FILE · updated 2013-10-10A structured controlled vocabulary of the anatomy and development of the African clawed frog (Xenopus laevis).
WHO Adverse Reaction Terminology
FILE · updated 2013-10-10WHO Adverse Reaction Terminology, 1997
C. elegans phenotype
FILE · updated 2013-10-10A structured controlled vocabulary of Caenorhabditis elegans phenotypes
C. elegans development
FILE · updated 2013-10-10A structured controlled vocabulary of the development of Caenorhabditis elegans.
C. elegans gross anatomy
FILE · updated 2013-10-10A structured controlled vocabulary of the anatomy of Caenorhabditis elegans.
Vertebrate Trait Ontology
FILE · updated 2013-10-10The Vertebrate Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or…
Vaccine Ontology
FILE · updated 2013-10-10A biomedical ontology in the vaccine domain
VIVO
FILE · updated 2013-10-10The VIVO ontology represents researchers in the context of their experience, outputs, interests, accomplishments, and associated institutions.
vertebrate Homologous Organ Groups
FILE · updated 2013-10-10vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as…
Vertebrate Anatomy Ontology
FILE · updated 2013-10-10Vertebrate anatomy ontology. Currently covers the skeletal system
VANDF
FILE · updated 2013-10-10Veterans Health Administration National Drug File
Units of measurement
FILE · updated 2013-10-10Metrical units for use in conjunction with PATO
Units Ontology
FILE · updated 2013-10-10A small ontology for the units of measurement developed during the development of the Sleep Domain Ontology (SDO). It supports the use of SDO within the PhysioMIMI application.
Uber anatomy ontology
FILE · updated 2013-10-10Uberon is a multi-species anatomy ontology created to facilitate comparison of phenotypes across multiple species, and for GO cross-products. Each uberon class is the superclass…
Teleost taxonomy
FILE · updated 2013-10-10The Teleost taxonomy ontology is being used to facilitate annotation of phenotypes, particularly for taxa that are not covered by NCBI because no submissions of molecular data…
TOK_Ontology
FILE · updated 2013-10-10An Ontology describing Resources having different formats. This Ontology can be used to annotate and describe Terminological, Ontological Knowledge resources.
Plant Trait Ontology
FILE · updated 2013-10-10A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature…
Traditional Medicine Signs and Symptoms Value Set
FILE · updated 2013-10-10The value set for the Signs and Symptoms property of the International Classification of Traditional Medicine (ICTM).
Translational Medicine Ontology
FILE · updated 2013-10-10This project focuses on the development of a high level patient-centric ontology for the pharmaceutical industry. The ontology should enable silos in discovery research,…
thesaurus
FILE · updated 2013-10-10thesaurus alternativa
Mosquito gross anatomy
FILE · updated 2013-10-10A structured controlled vocabulary of the anatomy of mosquitoes.
Time Event Ontology
FILE · updated 2013-10-10The Time Event Ontology (TEO) is an ontology for representing events, time, and their relationships.
Terminology for the Description of Dynamics
FILE · updated 2013-10-10The TErminology for the Description of DYnamics (TEDDY) project aims to provide an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of…
Taxonomic rank vocabulary
FILE · updated 2013-10-10A vocabulary of taxonomic ranks intended to replace the sets of rank terms found in the Teleost Taxonomy Ontology, the OBO translation of the NCBI taxonomy and similar OBO…
Teleost Anatomy Ontology
FILE · updated 2013-10-10Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa
Tick gross anatomy
FILE · updated 2013-10-10The anatomy of the Tick, Families: Ixodidae, Argassidae
Software Ontology
FILE · updated 2013-10-10The Software Ontology (SWO) has the scope of describing types of software used in Bioinformatics. The SWO covers areas such as the software type, the manufacturer of the software,…
Syndromic Surveillance Ontology
FILE · updated 2013-10-10The SSO encodes agreement among experts about how Emergency Department (ED) chief complaints are grouped into syndromes of public health importance (consensus definitions).
Solanaceae Phenotype Ontology
FILE · updated 2013-10-10Solanaceae crop phenotypes and traits, developed in collaboration with the research community, especially for breeder traits of agronomic importance.
Spider Ontology
FILE · updated 2013-10-10An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).
SoyOntology
FILE · updated 2013-10-10Growth, trait and development ontology for soybean
Sequence types and features
FILE · updated 2013-10-10The Sequence Ontology provides a structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in…
Suggested Ontology for Pharmacogenomics
FILE · updated 2013-10-10SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm…
SNP-Ontology
FILE · updated 2013-10-10SNP-Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of…
SNOMED Clinical Terms
FILE · updated 2013-10-10SNOMED Clinical Terms
Situation-Based Access Control
FILE · updated 2013-10-10Context-based healthcare access-control policies
Student Health Record
FILE · updated 2013-10-10The goal of SHR project is to develop an ontology for the description of student health records. Student health records are created for entering college students in order to…
Sample processing and separation techniques
FILE · updated 2013-10-10A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column…
Sleep Domain Ontology
FILE · updated 2013-10-10An application ontology for the domain of Sleep Medicine
Smoking Behavior Risk Ontology
FILE · updated 2013-10-10An ontology representing a causal model of smoking behavior risk, including genetic and environmental components. It also includes concepts for describing smoking-related…
Systems Biology
FILE · updated 2013-10-10The Systems Biology Ontology is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling. The ontology…
Subcellular Anatomy Ontology (SAO)
FILE · updated 2013-10-10SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.
RxNORM
FILE · updated 2013-10-10RxNorm Vocabulary
Rat Strain Ontology
FILE · updated 2013-10-10This ontology defines the hierarchical display of the different rat strains as derived from the parental strains
Role Ontology
FILE · updated 2013-10-10The Role Ontology (RoleO) is a ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO is a…
RNA ontology
FILE · updated 2013-10-10The central aim of the RNA Ontology Consortium (ROC) is to develop an ontology to capture all aspects of RNA - from primary sequence to alignments, secondary and tertiary…
RadLex
FILE · updated 2013-10-10RadLex is a controlled terminology for radiology-a single unified source of radiology terms for radiology practice, education, and research. For license information see :…
Physico-chemical process
FILE · updated 2013-10-10REX is an ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. REX includes both microscopic processes (involving molecular entities…
Reproductive trait and phenotype ontology
FILE · updated 2013-10-10Ontology for livestock reproductive traits and phenotypes
Randomized Controlled Trials (RCT) Ontology
FILE · updated 2013-10-10We developed and evaluated an ontology specifically for Randomized Controlled Trials in order to facilitate the production of systematic reviews and metaanalysis.
Read Codes, Clinical Terms Version 3 (CTV3)
FILE · updated 2013-10-10Clinical Terms Version 3 (CTV3) (Read Codes) (Q199): National Health Service National Coding and Classification Centre
Quantitative Imaging Biomarker Ontology
FILE · updated 2013-10-10An ontology that describes various concepts in quantitative imaging biomarkers.
Pathway ontology
FILE · updated 2013-10-10The goal of the Pathway Ontology is to capture the various kinds of biological networks, the relationships between them and the alterations or malfunctioning of such networks…
Proteomics data and process provenance
FILE · updated 2013-10-10A comprehensive proteomics data and process provenance ontology.
PRotein Ontology (PRO)
FILE · updated 2013-10-10PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. Each PRO term represents a distinct…
Plant Ontology
FILE · updated 2013-10-10The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. The PO is under active…
Plant Growth and Development Stage
FILE · updated 2013-10-10A controlled vocabulary of growth and developmental stages in various plants. Note that this has been subsumed into the PO.
Plant Anatomy
FILE · updated 2013-10-10A controlled vocabulary of plant morphological and anatomical structures representing organs, tissues, cell types, and their biological relationships based on spatial and…
Physical Medicine and Rehabilitation
FILE · updated 2013-10-10Knowledge representation related to computer-based decision support in rehabilitation; concepts and relationships in the rehabilitation domain, integrating clinical practice, the…
PMA 2010
FILE · updated 2013-10-10The Portfolio Management Application (PMA) is a system for tracking grants and producing reports - Users can access grant data through a query interface and a variety of…
PKO_Re
FILE · updated 2013-10-10Testing
PHARE
FILE · updated 2013-10-10The PHArmacogenomic RElationships Ontology (or PHARE) proposes concepts and roles to represent relationships of pharmacogenomics interest.
Parasite Experiment Ontology
FILE · updated 2013-10-10The Parasite Experiment Ontology (PEO) models provenance metadata associated with experiment protocols used in parasite research. The PEO extends the upper-level Provenir ontology…
Pediatric Terminology
FILE · updated 2013-10-10Terms associated with pediatrics, representing information related to child health and development from pre-birth through 21 years of age; contributed by the National Institute of…
Physician Data Query
FILE · updated 2013-10-10Physician Data Query (PDQ) Terminology is part of NCI's comprehensive cancer information database, which contains expert summaries on a wide range of cancer topics, a listing of…
Phenotypic quality
FILE · updated 2013-10-10Phenotypic qualities (properties). This ontology can be used in conjunction with other ontologies such as GO or anatomical ontologies to refer to phenotypes. Examples of qualities…
Ontology for Parasite LifeCycle
FILE · updated 2013-10-10The Ontology for Parasite LifeCycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In…
Orphanet Ontology of Rare Diseases
FILE · updated 2013-10-10OntoOrpha is an ontology of Rare Diseases that includes clinical signs (phenotypes) and genes. The full Orphanet nomenclature (labels, synonyms) is provided in six languages with…
Ontology of General Purpose Datatypes
FILE · updated 2013-10-10This ontology contains entities such as: datatype, datatype generator, datatype qualiy and others giving the possibility to represent arbitrary complex datatypes. This is an…
Ontology of Data Mining
FILE · updated 2013-10-10OntoDM is a generic ontology for the domain of data mining. The ontology includes the information processing processes that occur in the domain of data mining, participants in the…
Ontology of Medically Related Social Entities
FILE · updated 2013-10-10This ontology covers the domain of social entities that are related to health care, such as demographic information (social entities for recording gender (but not sex) and marital…
Ontology for MicroRNA Target Prediction
FILE · updated 2013-10-10The purpose of the OMIT ontology is to facilitate the identification and characterization of important roles microRNAs (miRNAs) played in human cancer. To be more specific, it…
Online Mendelian Inheritance in Man
FILE · updated 2013-10-10Online Mendelian Inheritance in Man, OMIM (TM). McKusick-Nathans Institute for Genetic Medicine, Johns Hopkins University (Baltimore, MD) and National Center for Biotechnology…
Ontology for General Medical Science
FILE · updated 2013-10-10The Ontology for General Medical Science (OGMS) is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities.…
Ontology of Glucose Metabolism Disorder
FILE · updated 2013-10-10Including the disease names. phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. (OBO and OWL format are available in sourceforge.)
Ontology for Genetic Interval
FILE · updated 2013-10-10An ontology to describe the genetic interval, and the relations between genetic intervals.
Ontology for disease genetic investigation
FILE · updated 2013-10-10The ontology for the original papers investigating the relations between genetic factors and disease.
Ontology of Clinical Research (OCRe)
FILE · updated 2013-10-10OCRe is an ontology designed to support systematic description of, and interoperable queries on, human studies and study elements.
OBOE SBC
FILE · updated 2013-10-10OBOE Extension for SBC-LTER
OBOE
FILE · updated 2013-10-10Observational Modeling
Ontology for Biomedical Investigations
FILE · updated 2013-10-10OBI is an ontology of investigations, the protocols and instrumentation used, the material used, the data generated and the types of analysis performed on it.
Ontology of Adverse Events (OAE)
FILE · updated 2013-10-10The Ontology of Adverse Events (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event…
NanoParticle Ontology
FILE · updated 2013-10-10An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.
Non Randomized Controlled Trials Ontology
FILE · updated 2013-10-10We built an ontology to help the systematic review and meta-analysis process of non randomized clinical trials.
NMR-instrument specific component of metabolomics investigations
FILE · updated 2013-10-10Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation.
Neural-Immune Gene Ontology
FILE · updated 2013-10-10The Neural-Immune Gene Ontology (NIGO) is a subset of GO directed for neurological and immunological systems. NIGO was created by clipping those GO terms that are not associated…
NIF Dysfunction
FILE · updated 2013-10-10This ontology contains the former BIRNLex-Disease, version 1.3.2. -- The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering…
NIF Cell
FILE · updated 2013-10-10Cell types from NIFSTD
NIFSTD
FILE · updated 2013-10-10NIF Standard ontology (NIFSTD) is a core component of Neuroscience Information Framework (NIF) project (http://neuinfo.org), a semantically enhanced portal for accessing and…
Neomark Oral Cancer-Centred Ontology
FILE · updated 2013-10-10Ontology that describes the medical information necessary for early detection of the oral cancer reoccurrence extracted from the NeoMark Project.
Neomark Oral Cancer Ontology
FILE · updated 2013-10-10Ontology that describes the medical information necessary for early detection of the oral cancer reoccurrence extracted from the NeoMark Project.
Neural ElectroMagnetic Ontologies
FILE · updated 2013-10-10Neural ElectroMagnetic Ontologies (NEMO) describe classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional…
National Drug File
FILE · updated 2013-10-10National Drug File - Reference Terminology Public Inferred Edition, 2008_03_11
National Drug Data File
FILE · updated 2013-10-10National Drug Data File Plus Source Vocabulary
NCI Thesaurus
FILE · updated 2013-10-10A vocabulary for clinical care, translational and basic research, and public information and administrative activities.
NCBI organismal classification
FILE · updated 2013-10-10A taxonomic classification of living organisms and associated artifacts for their controlled description within the context of databases.
Natural Products Ontology
FILE · updated 2013-10-10An ontology for describing biological activities of natural products.
Metathesaurus CPT Hierarchical Terms
FILE · updated 2013-10-10Metathesaurus CPT Hierarchical Terms
Medical Subject Headings
FILE · updated 2013-10-10Medical Subject Headings (MeSH);National Library of Medicine; 2011
Mass spectrometry
FILE · updated 2013-10-10A structured controlled vocabulary for the annotation of mass spectrometry experiments. Developed by the HUPO Proteomics Standards Initiative.
Mouse pathology
FILE · updated 2013-10-10A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes
Mammalian phenotype
FILE · updated 2013-10-10The Mammalian Phenotype Ontology is under development as a community effort to provide standard terms for annotating mammalian phenotypic data.
Protein modification
FILE · updated 2013-10-10PSI-MOD is an ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph…
MGED Ontology
FILE · updated 2013-10-10Concepts, definitions, terms, and resources for standardized description of a microarray experiment in support of MAGE v.1.
Measurement Method Ontology
FILE · updated 2013-10-10The Measurement Method Ontology is designed to represent the variety of methods used to make qualitative and quantitative clincial and phenotype measurements both in the clinic…
Mosquito insecticide resistance
FILE · updated 2013-10-10Application ontology for entities related to insecticide resistance in mosquitos
Protein-protein interaction
FILE · updated 2013-10-10A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Developed by the HUPO Proteomics Standards Initiative.
MaHCO - An MHC Ontology
FILE · updated 2013-10-10The MaHCO contains terms necessary for describing and categorizing concepts related to MHC, in general, and for a number of model species, and also for humans.
Emotion Ontology
FILE · updated 2013-10-10An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings, designed to support interdisciplinary research by providing unified annotations.…
Medaka fish anatomy and development
FILE · updated 2013-10-10A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.
Mental Functioning Ontology
FILE · updated 2013-10-10The Mental Functioning Ontology is an ontology for mental functioning, including mental processes such as cognition and traits such as intelligence, and related diseases and…
MESH Thesaurus (OWL version)
FILE · updated 2013-10-10Medical Subjects Headings Thesaurus 2012, OWL version
MeGO
FILE · updated 2013-10-10bacteriophage and plasmid reproduction and maintenance processes
MedlinePlus Health Topics
FILE · updated 2013-10-10MedlinePlus Health Topics;National Library of Medicine;June 14, 2008;Bethesda, MD
MedDRA
FILE · updated 2013-10-10Medical Dictionary for Regulatory Activities Terminology (MedDRA)
Master Drug Data Base
FILE · updated 2013-10-10Master Drug Data Base, 2009_08_05
MIxS Controlled Vocabularies
FILE · updated 2013-10-10Controlled vocabularies for the MIxS family of metadata checklists. See http://gensc.org/gc_wiki/index.php/MIxS for details on the MIxS checklists.
Cell line ontology
FILE · updated 2013-10-10Cell lines are key experimental models to understand protein interactions and signaling pathways. With a large pool of such data coming from different cell lines of different…
Cell line ontology
FILE · updated 2013-10-10Ontologies provide a common platform of controlled vocabulary for researchers who need to share information across a particular domain, inclusive of machine-interpretable…
Breast tissue cell lines
FILE · updated 2013-10-10Contains a comprehensive list of cell lines derived from breast tissue, both normal and pathological. The ontology in built in OWL with cross relation to classes- genetic…
Minimal anatomical terminology
FILE · updated 2013-10-10Minimal set of terms for anatomy
Multiple alignment
FILE · updated 2013-10-10An ontology for data retrieval and exchange in the fields of multiple DNA/RNA alignment, protein sequence and protein structure alignment.
Mouse adult gross anatomy
FILE · updated 2013-10-10A structured controlled vocabulary of the adult anatomy of the mouse (Mus).
Logical Observation Identifier Names and Codes
FILE · updated 2013-10-10Logical Observation Identifier Names and Codes (LOINC);Version 2.26;January 2, 2009
Lipid Ontology
FILE · updated 2013-10-10Lipid research is increasingly integrated within systems level biology such as lipidomics where lipid classification is required before appropriate annotation of chemical…
Loggerhead nesting
FILE · updated 2013-10-10A demonstration of ontology construction as a general technique for coding ethograms and other descriptions of behavior into machine understandable forms. An ontology for…
Kinetic Simulation Algorithm Ontology
FILE · updated 2013-10-10The Kinetic Simulation Algorithm Ontology aims at providing support in unambiguously referring to simulation algorithms when describing a simulation experiment. It describes and…
SysMO-JERM
FILE · updated 2013-10-10an ontology to describe the entities and relationships in SysMO-DB, a Systems Biology environment for the sharing and exchange of data and models.
IxnO
FILE · updated 2013-10-10The Interaction ontology (IxnO) was developed to enable curation of chemical-gene and chemical-protein interactions for the Comparative Toxicogenomics Database (CTD). CTD is a…
Hewan Invertebrata
FILE · updated 2013-10-10taxonomy animal invertebrates
Interaction Network Ontology
FILE · updated 2013-10-10The Interaction Network Ontology (INO) is an ontology in the domain of interaction network. INO aims to standardize interaction network annotation, integrate various interaction…
Molecule role (INOH Protein name/family name ontology)
FILE · updated 2013-10-10A structured controlled vocabulary of concrete protein names and generic (abstract) protein names. This ontology is a INOH pathway annotation ontology, one of a set of ontologies…
IMGT-ONTOLOGY
FILE · updated 2013-10-10IMGT-ONTOLOGY is the first ontology for immunogenetics and immunoinformatics. It provides a semantic specification of the terms to be used in immunogenetics and immunoinformatics…
Event (INOH pathway ontology)
FILE · updated 2013-10-10A structured controlled vocabulary of pathway centric biological processes. This ontology is a INOH pathway annotation ontology, one of a set of ontologies intended to be used in…
Malaria Ontology
FILE · updated 2013-10-10An application ontology for malaria extending the infectious disease ontology (IDO). Version 1.22 reshapes the "parasite organism" section.
Brucellosis Ontology
FILE · updated 2013-10-10Brucellosis Ontology is a biomedical ontology in the domain of zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular baterium.
Infectious Disease Ontology
FILE · updated 2013-10-10The IDO ontologies are designed as a set of interoperable ontologies that will together provide coverage of the infectious disease domain. At the core of the set is a general…
ICPS Network
FILE · updated 2013-10-10Ontology network about Patient Safety Incident. This work has been carried out by the Ontological Engineering Group, using sources from the University of Saint Etienne and the…
ICPC-2 PLUS
FILE · updated 2013-10-10ICPC-2 PLUS
International Classification of Primary Care
FILE · updated 2013-10-10The International Classification of Primary Care (ICPC). Denmark: World Organisation of Family Doctors, 1993.
International Classification for Nursing Practice
FILE · updated 2013-10-10International Classification for Nursing Practice
International Classification of Functioning, Disability and Health (ICF)
FILE · updated 2013-10-10The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. These domains are…
International Classification of Diseases
FILE · updated 2013-10-10The ICD is the international standard diagnostic classification for all general epidemiological, many health management purposes and clinical use.
ICD-10-PCS
FILE · updated 2013-10-10ICD-10-PCS, 2009
ICD10CM
FILE · updated 2013-10-10International Classification of Diseases, 10th Edition, Clinical Modification, 2011_01
ICD10
FILE · updated 2013-10-10International Statistical Classification of Diseases and Related Health Problems (ICD-10). 10th rev. Geneva
Information Artifact Ontology
FILE · updated 2013-10-10The Information Artifact Ontology (IAO) is a new ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch.
HUGO
FILE · updated 2013-10-10Human Genome Organisation (HUGO) Gene Nomenclature Committee at the European Bioinformatics Institute approves a gene name and symbol (short-form abbreviation) for each known…
Human Phenotype Ontology
FILE · updated 2013-10-10The Human Phenotype Ontology is being developed to provide a structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease.…
Host Pathogen Interactions Ontology
FILE · updated 2013-10-10Ontology for host pathogen interactions in farmed animals
HOM-HARVARD
FILE · updated 2013-10-10HOM-HARVARD demographics for i2b2
Ontology of homology and related concepts in biology
FILE · updated 2013-10-10This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.
HEALTH_INDICATORS
FILE · updated 2013-10-10Standardized health outcome and health determinant indicators as maintained by the CDCâ??s National Center for Health Statistics
Health Level Seven
FILE · updated 2013-10-10This version is the first update to Normative RIM, Release 3. It is based on changes approved in Harmonization in November 2010. This release of the RIM is bound to HL7 Abstract…
HCPCS
FILE · updated 2013-10-10Healthcare Common Procedure Coding System
Hymenoptera Anatomy Ontology
FILE · updated 2013-10-10A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, sawflies and ants)
Gene Regulation Ontology
FILE · updated 2013-10-10The Gene Regulation Ontology (GRO) is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as…
Cereal plant gross anatomy
FILE · updated 2013-10-10A structured controlled vocabulary for the anatomy of Gramineae. Please note that this ontology has now been superseded by the <a http://bioportal.bioontology.org/ontologies/1587>…
Cereal Plant Development
FILE · updated 2013-10-10A structured controlled vocabulary for describing cereal plant development and growth stages. Please note that this ontology has now been superseded by the Plant Ontology.
Gene Ontology
FILE · updated 2013-10-10Provides structured controlled vocabularies for the annotation of gene products with respect to their molecular function, cellular component, and biological role. The Gene…
Gene Ontology Extension
FILE · updated 2013-10-10Gene Ontology Extension
General Formal Ontology: Biology
FILE · updated 2013-10-10GFO-Bio is a biological core ontology built on the General Formal Ontology.
General Formal Ontology
FILE · updated 2013-10-10The General Formal Ontology (GFO) is a top-level ontology integrating objects and processes.
GeoSpecies Ontology
FILE · updated 2013-10-10This ontology was designed to help integrate species concepts with species occurrences, gene sequences, images, references and geographical information. See also Taxonconcept.org
Fission Yeast Phenotype Ontology
FILE · updated 2013-10-10FYPO is a formal ontology of phenotypes observed in fission yeast. FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the…
Foundational Model of Anatomy
FILE · updated 2013-10-10FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy. The description of how this OWL version was generated is in…
Influenza Ontology
FILE · updated 2013-10-10Starting in the fall of 2007, a collaborative group of influenza researchers have established an influenza ontology. The influenza ontology is an application ontology.
Family Health History Ontology
FILE · updated 2013-10-10The FHHO facilitates representing the family health histories of persons related by biological and/or social family relationships (e.g. step, adoptive) who share genetic,…
FDA Medical Devices (2010)
FILE · updated 2013-10-10Medical Devices as downloaded from the FDA site in Jan. 2011
Fly taxonomy
FILE · updated 2013-10-10The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase.
Drosophila development
FILE · updated 2013-10-10A structured controlled vocabulary of the development of Drosophila melanogaster.
FlyBase Controlled Vocabulary
FILE · updated 2013-10-10A structured controlled vocabulary used for various aspects of annotation by FlyBase. This ontology is maintained by FlyBase for various aspects of annotation not covered, or not…
Drosophila gross anatomy
FILE · updated 2013-10-10A structured controlled vocabulary of the anatomy of Drosophila melanogaster.
Biological imaging methods
FILE · updated 2013-10-10A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.
Fungal gross anatomy
FILE · updated 2013-10-10A structured controlled vocabulary for the anatomy of fungi.
ExO
FILE · updated 2013-10-10Exposure Ontology. A draft ontology for exposure science.
eVOC (Expressed Sequence Annotation for Humans)
FILE · updated 2013-10-10Provides structured controlled vocabularies for the annotation of expressed sequences with respect to anatomical system, cell type, developmental stage, experimental technique,…
eagle-i research resource ontology
FILE · updated 2013-10-10This ontology models research resources such instruments. protocols, reagents, animal models and biospecimens. It has been developed in the context of the eagle-i project…
Epilepsy
FILE · updated 2013-10-10Ontology about the epilepsy domain and epileptic seizures. Based on the diagnosis proposed by the International League Against Epilepsy (ILAE).
Cardiac Electrophysiology Ontology
FILE · updated 2013-10-10The Cardiac Electrophysiology Ontology contains terms describing single-channel electrophysiological experiments and data obtained using voltage-clamp, current clamp and…
Plant environmental conditions
FILE · updated 2013-10-10A structured controlled vocabulary for the representation of plant environmental conditions.
Environment Ontology
FILE · updated 2013-10-10Ontology of environmental features and habitats
Mouse gross anatomy and development
FILE · updated 2013-10-10A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).
Human developmental anatomy, abstract version, v2
FILE · updated 2013-10-10A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage…
Human developmental anatomy, abstract version
FILE · updated 2013-10-10A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage…
Human developmental anatomy, timed version
FILE · updated 2013-10-10A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage…
Experimental Factor Ontology
FILE · updated 2013-10-10The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental variables in the Gene Expression Atlas, EBI. The ontology has been developed…
Evidence codes
FILE · updated 2013-10-10A rich ontology for experimental and other evidence statements.
Electrocardiography Ontology
FILE · updated 2013-10-10The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s)…
Human disease ontology
FILE · updated 2013-10-10Creating a comprehensive hierarchical controlled vocabulary for human disease representation.
DIKB-Evidence-Ontology
FILE · updated 2013-10-10An evidence taxonomy that, when combined with a set of inclusion criteria, enable drug experts to specify what their confidence in a drug mechanism assertion would be if it were…
Diagnostic Ontology
FILE · updated 2013-10-10We built a computational diagnostic ontology containing 91 elements, including classes and sub-classes, which are required to conduct SR-MA (Systematic Review - Meta Analysis) for…
Ontology for Drug Discovery Investigations
FILE · updated 2013-10-10The goal of DDI project is to develop an ontology for the description of drug discovery investigations. DDI aims to follow to the OBO (Open Biomedical Ontologies) Foundry…
Dictyostelium discoideum anatomy
FILE · updated 2013-10-10A structured controlled vocabulary of the anatomy of the slime-mould Dictyostelium discoideum.
Dendritic cell
FILE · updated 2013-10-10Representation of types of dendritic cell. Note that the domain of this ontology is wholly subsumed by the domain of the Cell ontology (CL).
Cerebrotendinous xanthomatosis
FILE · updated 2013-10-10The ontology represents CTX phenotypes, genetic variants, and bidirectional relationships between them though a patient model. The CTX ontology was build reusing the Human…
Common Terminology Criteria for Adverse Events
FILE · updated 2013-10-10A coding system for reporting adverse events that occur in the course of cancer therapy. It was derived from the Common Toxicity Criteria (CTC) v2.0 and is maintained by the…